DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
By Amarendran R. Subramanian
Introduction:
DIALIGN-TX is a substantial improvement of DIALIGN-T that combines greedy and progressive alignment strategies in a new algorithm which is now available for download. Further information can be found in:- Abstract of DIALIGN-TX
- Short outline of the algorithmic improvements
- Benchmark results and construction of IRMBASE 2 and DIRMBASE 1
Further Information and Citation
More detailed descriptions of the methods can be found in:
- Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern:
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Algorithms for Molecular Biology 2008, 3:6 - Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael
Kaufmann, Burkhard Morgenstern:
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
BMC Bioinformatics 2005, 6:66.
Research work using DIALIGN-TX/DIALIGN-T should cite the above mentioned publications.
Download and Submission
Downloads are available on the download page.
If you don't want to install a local copy of DIALIGN-TX you can submit your data to DIALIGN-TX for online processing
using a
Contact
Amarendran R. Subramanian subraman@informatik.uni-tuebingen.de
Links
The alignment editor program STRAP by Christoph Gille supports DIALIGN-TX/DIALIGN-T as underlying protein alignment program.